Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025417

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025417
Fusion NameHBV-chr7:45847092 integration
ValidatedNo
Curated WayViMIC
MethodHepatitis B virus capture sequencing
Wet AssayYes
Sample ID-
Sample Name1T
Sample TypeTumor
Age53
GenderMale
Disease Information
Disease NameIntrahepatic cholangiocarcinoma
Disease AbbreviationICC
CancerYes
Literature
PubMed ID33037855
JournalHepatology Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandp12.3
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start45886691
Hg19 End45886691
Hg38 Start45847092
Hg38 End45847093
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneRNU6-326P
Distance3353
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint12900
Virus Breakpoint23034
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404739