Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025419

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025419
Fusion NameHBV-MAGI2 integration
ValidatedNo
Curated WayViMIC
MethodHepatitis B virus capture sequencing
Wet AssayYes
Sample ID-
Sample Name1T
Sample TypeTumor
Age53
GenderMale
Disease Information
Disease NameIntrahepatic cholangiocarcinoma
Disease AbbreviationICC
CancerYes
Literature
PubMed ID33037855
JournalHepatology Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandq21.11
Human Strand+
Human Integration Location Typeintronic
Hg19 Start78558817
Hg19 End78558817
Hg38 Start78929501
Hg38 End78929502
Junction Sequence-
Target Gene
Target GeneMAGI2
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint12305
Virus Breakpoint22439
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404741