| Basic Information ▶ | |
| VISDB ID | TVIS10030421 |
|---|---|
| Fusion Name | HBV-PCDHGA1 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Whole genome bisulfite sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | - |
| Sample Type | unsure |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Liver diseases and hepatocellular carcinoma (HCC). |
| Disease Abbreviation | - |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 32741373 |
| Journal | BMC medicine |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr5 |
| Cytogenetic Band | q31.3 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 140782317 |
| Hg19 End | 140782318 |
| Hg38 Start | 141402750 |
| Hg38 End | 141402751 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | PCDHGA1, PCDHGA2, PCDHGA3, PCDHGB1, PCDHGA4, PCDHGB2, PCDHGA5, PCDHGB3, PCDHGA6, PCDHGA7, PCDHGB4, PCDHGA8, PCDHGB5 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | - |
| Virus Genome Accession | - |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 1409786 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D