Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10032901

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10032901
Fusion NameHBV-LARGE1 integration
ValidatedNo
Curated WayViMIC
MethodcSMART (Circulating Single-Molecule Amplification and Resequencing Technology)-based method (SIM)
Wet AssayYes
Sample ID-
Sample NameXJ204697
Sample TypeTumor
Age67
GenderFemale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33947693
JournalClinical Cancer Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr22
Cytogenetic Bandq12.3
Human Strand
Human Integration Location Typeintronic
Hg19 Start34086550
Hg19 End34086550
Hg38 Start33690564
Hg38 End33690565
Junction Sequence-
Target Gene
Target GeneLARGE1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NamegtC
Virus Genome AccessionLC365290.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genotype C C-1 PreC/C gene for precore/core protein, complete cds
Virus Genome Length3215 bp
Virus Breakpoint1556
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1501179