Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10033678

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10033678
Fusion NameHBV-MRPS15 integration
ValidatedNo
Curated WayViMIC
MethodcSMART (Circulating Single-Molecule Amplification and Resequencing Technology)-based method (SIM)
Wet AssayYes
Sample ID-
Sample NameXJ208283
Sample TypeTumor
Age42
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33947693
JournalClinical Cancer Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp34.3
Human Strand
Human Integration Location Typeintronic
Hg19 Start36929727
Hg19 End36929727
Hg38 Start36464126
Hg38 End36464127
Junction Sequence-
Target Gene
Target GeneMRPS15, ENSG00000297367
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NamegtC
Virus Genome AccessionLC365290.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genotype C C-1 PreC/C gene for precore/core protein, complete cds
Virus Genome Length3215 bp
Virus Breakpoint11830
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1501958