Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10034010

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10034010
Fusion NameHBV-CSMD1 integration
ValidatedNo
Curated WayViMIC
MethodcSMART (Circulating Single-Molecule Amplification and Resequencing Technology)-based method (SIM)
Wet AssayYes
Sample ID-
Sample NameXJ209270
Sample TypeTumor
Age46
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33947693
JournalClinical Cancer Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandp23.2
Human Strand
Human Integration Location Typeintronic
Hg19 Start4320899
Hg19 End4320899
Hg38 Start4463377
Hg38 End4463378
Junction Sequence-
Target Gene
Target GeneCSMD1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NamegtB
Virus Genome AccessionLC500247.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHBV genotype B BRJT2019-1 DNA, complete genome
Virus Genome Length3215 bp
Virus Breakpoint11964
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1502291