Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10035144

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10035144
Fusion NameHBV-ENOX1 integration
ValidatedNo
Curated WayViMIC
MethodcSMART (Circulating Single-Molecule Amplification and Resequencing Technology)-based method (SIM)
Wet AssayYes
Sample ID-
Sample NameXJ209518
Sample TypeTumor
Age51
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33947693
JournalClinical Cancer Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr13
Cytogenetic Bandq14.11
Human Strand
Human Integration Location Typeintronic
Hg19 Start44285548
Hg19 End44285548
Hg38 Start43711412
Hg38 End43711413
Junction Sequence-
Target Gene
Target GeneENOX1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NamegtB
Virus Genome AccessionLC500247.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHBV genotype B BRJT2019-1 DNA, complete genome
Virus Genome Length3215 bp
Virus Breakpoint11268
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1503427