Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10036666

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10036666
Fusion NameHBV-FLJ46284 integration
ValidatedNo
Curated WayViMIC
MethodcSMART (Circulating Single-Molecule Amplification and Resequencing Technology)-based method (SIM)
Wet AssayYes
Sample ID-
Sample NameXJ201057
Sample TypeTumor
Age65
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33947693
JournalClinical Cancer Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandq22.1
Human Strand
Human Integration Location Typeintronic
Hg19 Start93836782
Hg19 End93836782
Hg38 Start92824554
Hg38 End92824555
Junction Sequence-
Target Gene
Target GeneFLJ46284, ENSG00000253577
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NamegtC
Virus Genome AccessionLC365290.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genotype C C-1 PreC/C gene for precore/core protein, complete cds
Virus Genome Length3215 bp
Virus Breakpoint11741
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1504952