Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10037123

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10037123
Fusion NameHBV-ENSG00000269179 integration
ValidatedNo
Curated WayViMIC
MethodcSMART (Circulating Single-Molecule Amplification and Resequencing Technology)-based method (SIM)
Wet AssayYes
Sample ID-
Sample NameXJ207888
Sample TypeTumor
Age50
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33947693
JournalClinical Cancer Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr19
Cytogenetic Bandq13.33
Human Strand
Human Integration Location Typeintronic
Hg19 Start50437344
Hg19 End50437344
Hg38 Start49934087
Hg38 End49934088
Junction Sequence-
Target Gene
Target GeneENSG00000269179
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NamegtC
Virus Genome AccessionLC365290.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genotype C C-1 PreC/C gene for precore/core protein, complete cds
Virus Genome Length3215 bp
Virus Breakpoint1335
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1505409