| Basic Information ▶ | |
| VISDB ID | TVIS10038832 |
|---|---|
| Fusion Name | HBV-C4orf50 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | cSMART (Circulating Single-Molecule Amplification and Resequencing Technology)-based method (SIM) |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | XJ209318 |
| Sample Type | Tumor |
| Age | 65 |
| Gender | Male |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 33947693 |
| Journal | Clinical Cancer Research |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr4 |
| Cytogenetic Band | p16.1 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 6165220 |
| Hg19 End | 6165220 |
| Hg38 Start | 6163493 |
| Hg38 End | 6163494 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | C4orf50, JAKMIP1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | gtA |
| Virus Genome Accession | LC519798.1 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | HBV genotype A B-330-Ban DNA, complete genome |
| Virus Genome Length | 3221 bp |
| Virus Breakpoint1 | 333 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 1507119 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D