Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10039243

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10039243
Fusion NameHBV-ENSG00000276490 integration
ValidatedNo
Curated WayViMIC
MethodcSMART (Circulating Single-Molecule Amplification and Resequencing Technology)-based method (SIM)
Wet AssayYes
Sample ID-
Sample NameXJ204310
Sample TypeTumor
Age37
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33947693
JournalClinical Cancer Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandq23.33
Human Strand
Human Integration Location Typeintronic
Hg19 Start96521320
Hg19 End96521320
Hg38 Start94761563
Hg38 End94761564
Junction Sequence-
Target Gene
Target GeneENSG00000276490
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NamegtC
Virus Genome AccessionLC365290.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genotype C C-1 PreC/C gene for precore/core protein, complete cds
Virus Genome Length3215 bp
Virus Breakpoint11306
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1507531