Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10040281

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10040281
Fusion NameHBV-chr17:82305421 integration
ValidatedNo
Curated WayViMIC
MethodcSMART (Circulating Single-Molecule Amplification and Resequencing Technology)-based method (SIM)
Wet AssayYes
Sample ID-
Sample NameXJ207295
Sample TypeTumor
Age40
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33947693
JournalClinical Cancer Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq25.3
Human Strand
Human Integration Location Typeintergenic
Hg19 Start80263297
Hg19 End80263297
Hg38 Start82305421
Hg38 End82305422
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneCD7
Distance8143
Virus Information
Virus NameHepatitis B virus
Virus Subtype NamegtC
Virus Genome AccessionLC365290.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genotype C C-1 PreC/C gene for precore/core protein, complete cds
Virus Genome Length3215 bp
Virus Breakpoint12604
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1508569