Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10040303

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10040303
Fusion NameHBV-chr3:90284654 integration
ValidatedNo
Curated WayViMIC
MethodcSMART (Circulating Single-Molecule Amplification and Resequencing Technology)-based method (SIM)
Wet AssayYes
Sample ID-
Sample NameXJ204697
Sample TypeTumor
Age67
GenderFemale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33947693
JournalClinical Cancer Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandp11.1
Human Strand
Human Integration Location Typeintergenic
Hg19 Start90333804
Hg19 End90333804
Hg38 Start90284654
Hg38 End90284655
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NamegtC
Virus Genome AccessionLC365290.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genotype C C-1 PreC/C gene for precore/core protein, complete cds
Virus Genome Length3215 bp
Virus Breakpoint12226
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1508591