Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10040338

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10040338
Fusion NameHBV-chr7:77653199 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID8
Sample Name#008N
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandq11.23
Human Strand
Human Integration Location Typeintergenic
Hg19 Start77282516
Hg19 End77282516
Hg38 Start77653199
Hg38 End77653199
Junction SequenceTTAGAGGAGGGGGTTGAGGA
Target Gene
Target Gene-
Nearby GeneAPTR
Distance4460
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_D
Virus Genome AccessionX85254
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase)
Virus Genome Length3182 bp
Virus Breakpoint11812
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-