| Basic Information ▶ | |
| VISDB ID | TVIS10040390 |
|---|---|
| Fusion Name | HBV-chr12:33987573 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 10 |
| Sample Name | #010N |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr12 |
| Cytogenetic Band | p11.1 |
| Human Strand | |
| Human Integration Location Type | intergenic |
| Hg19 Start | 34140508 |
| Hg19 End | 34140508 |
| Hg38 Start | 33987573 |
| Hg38 End | 33987573 |
| Junction Sequence | TCATTTTTCTTTATTTCTAT |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | Y_RNA |
| Distance | 5007 |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_D |
| Virus Genome Accession | X85254 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase) |
| Virus Genome Length | 3182 bp |
| Virus Breakpoint1 | 1821 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Region | intergenic |
| Impact | NA |
| AlphaGenome Analysis | |
| Window | chr12:33922037-34053109 |
| RNA-seq Change (±2kb) | Mean: -2.202432369813323e-05 | Peak: 0.0106201171875 |
| ATAC Change (±2kb) | Mean: 0.00010970854782499373 | Peak: 12.9306640625 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change 0.3% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D