| Basic Information ▶ | |
| VISDB ID | TVIS10041054 |
|---|---|
| Fusion Name | HBV-ENSG00000289961 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 32 |
| Sample Name | #032T |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr6 |
| Cytogenetic Band | q21 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 113671760 |
| Hg19 End | 113671760 |
| Hg38 Start | 113350558 |
| Hg38 End | 113350558 |
| Junction Sequence | GATTCGCACTCCTCCAGCCT |
| Target Gene ▶ | |
| Target Gene | ENSG00000289961, LINC02518 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_A |
| Virus Genome Accession | X02763 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis b virus genome (serotype adw2) |
| Virus Genome Length | 3221 bp |
| Virus Breakpoint1 | 2224 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000702129.2, Transcript 2: ENST00000835063.1, Transcript 3: ENST00000835064.1, Transcript 4: ENST00000835066.1, Transcript 5: ENST00000835067.1, Transcript 6: ENST00000835061.1, Transcript 7: ENST00000835060.1, Transcript 8: ENST00000835062.1 |
| Transcript 1 Gene Id | ENSG00000289961.2 |
| Transcript 1 Gene Name | ENSG00000289961 |
| Transcript 2 Gene Id | ENSG00000289961.2 |
| Transcript 2 Gene Name | ENSG00000289961 |
| Transcript 3 Gene Id | ENSG00000289961.2 |
| Transcript 3 Gene Name | ENSG00000289961 |
| Transcript 4 Gene Id | ENSG00000289961.2 |
| Transcript 4 Gene Name | ENSG00000289961 |
| Transcript 5 Gene Id | ENSG00000289961.2 |
| Transcript 5 Gene Name | ENSG00000289961 |
| Transcript 6 Gene Id | ENSG00000232316.3 |
| Transcript 6 Gene Name | LINC02518 |
| Transcript 7 Gene Id | ENSG00000232316.3 |
| Transcript 7 Gene Name | LINC02518 |
| Transcript 8 Gene Id | ENSG00000232316.3 |
| Transcript 8 Gene Name | LINC02518 |
| AlphaGenome Analysis | |
| Window | chr6:113285022-113416094 |
| RNA-seq Change (±2kb) | Mean: -2.3970620532054454e-05 | Peak: 0.07568359375 |
| ATAC Change (±2kb) | Mean: -0.0005185605259612203 | Peak: 15.255859375 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -1.1% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D