Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10041202

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10041202
Fusion NameHBV-VPS13C integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID32
Sample Name#032T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr15
Cytogenetic Bandq22.2
Human Strand
Human Integration Location Typeintronic
Hg19 Start62285013
Hg19 End62285013
Hg38 Start61992814
Hg38 End61992814
Junction SequenceCTCCATTTACACAATGTGGA
Target Gene
Target GeneVPS13C
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_A
Virus Genome AccessionX02763
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis b virus genome (serotype adw2)
Virus Genome Length3221 bp
Virus Breakpoint11000
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-