Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10041266

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10041266
Fusion NameHBV-chr2:112664328 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID33
Sample Name#033N
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq14.1
Human Strand
Human Integration Location Typeintergenic
Hg19 Start113421905
Hg19 End113421905
Hg38 Start112664328
Hg38 End112664328
Junction SequenceCCCTCCGGTTGTGTCCGCCT
Target Gene
Target Gene-
Nearby GeneSLC20A1
Distance503
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_C
Virus Genome AccessionAB014381
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint12865
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-