Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10041476

Basic Information ▶
VISDB ID	TVIS10041476
Fusion Name	HBV-chr1:227538572 integration
Validated	No
Curated Way	Curated
Method	HBV capture sequencing
Wet Assay	Yes
Sample ID	4241
Sample Name	#04242N
Sample Type	Tumor
Age	-
Gender	-
Disease Information ▶
Disease Name	-
Disease Abbreviation	-
Cancer	-
Literature ▶
PubMed ID	33563643
Journal	Gut
Published Year	2021
Human Genome ▶
Human Genome Version Description	GRCh37/hg19
Human Genome RefSeq Accession	GCF_000001405.13
Human Chromosome	chr1
Cytogenetic Band	q42.13
Human Strand
Human Integration Location Type	intergenic
Hg19 Start	227726273
Hg19 End	227726273
Hg38 Start	227538572
Hg38 End	227538572
Junction Sequence	CATGTCTTCGGGGTTTCATT
Target Gene ▶
Target Gene	-
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Hepatitis B virus
Virus Subtype Name	HBV_D
Virus Genome Accession	X85254
TaxonomyID	10407
Virus Abbreviation	HBV
Virus Genome	Hepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase)
Virus Genome Length	3182 bp
Virus Breakpoint1	1805
Virus Breakpoint2	-
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	-
ViMIC ID	-
Predicted VIS Effect ▶
Region	intergenic
Impact	NA

AlphaGenome Analysis
Window	chr1:227473036-227604108
RNA-seq Change (±2kb)	Mean: 0.0002035871584666893 \| Peak: 0.05126953125
ATAC Change (±2kb)	Mean: -0.0002970446366816759 \| Peak: 1.3974609375
Interpretation	RNA-seq: no signal in region (REF≈0, ALT≈0) \| Splice sites: no signal in region (REF≈0, ALT≈0) \| ATAC: minimal change -1.8%
Visualization