Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10041646

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10041646
Fusion NameHBV-NCEH1 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID4264
Sample Name#04264T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandq26.31
Human Strand
Human Integration Location Typeintronic
Hg19 Start172413930
Hg19 End172413930
Hg38 Start172696140
Hg38 End172696140
Junction SequenceTTTACATTAACACATATACT
Target Gene
Target GeneNCEH1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_A
Virus Genome AccessionX02763
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis b virus genome (serotype adw2)
Virus Genome Length3221 bp
Virus Breakpoint12424
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-