Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10042023

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10042023
Fusion NameHBV-CDC5L integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID80
Sample Name#080N
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandp21.1
Human Strand
Human Integration Location Typeintronic
Hg19 Start44391594
Hg19 End44391594
Hg38 Start44423857
Hg38 End44423857
Junction SequenceTTTTCAATCAAACAGGAACC
Target Gene
Target GeneCDC5L
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_D
Virus Genome AccessionX85254
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase)
Virus Genome Length3182 bp
Virus Breakpoint11821
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-