Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10042416

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10042416
Fusion NameHBV-ENSG00000291034 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID80
Sample Name#080N
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human ChromosomechrY
Cytogenetic Bandq11.21
Human Strand
Human Integration Location Typeintronic
Hg19 Start14254148
Hg19 End14254148
Hg38 Start12133442
Hg38 End12133442
Junction SequenceGCTGTGCTGCCAACTGGATC
Target Gene
Target GeneENSG00000291034
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_D
Virus Genome AccessionX85254
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase)
Virus Genome Length3182 bp
Virus Breakpoint11359
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-