| Basic Information ▶ | |
| VISDB ID | TVIS10042559 |
|---|---|
| Fusion Name | HBV-LINC02573 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 80 |
| Sample Name | #080N |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr21 |
| Cytogenetic Band | q21.1 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 21577174 |
| Hg19 End | 21577174 |
| Hg38 Start | 20204861 |
| Hg38 End | 20204861 |
| Junction Sequence | CTTGCCACAAGAACACATCG |
| Target Gene ▶ | |
| Target Gene | LINC02573 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_D |
| Virus Genome Accession | X85254 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase) |
| Virus Genome Length | 3182 bp |
| Virus Breakpoint1 | 716 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000233236.2 |
| Gene Name | LINC02573 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000746617.1 |
| AlphaGenome Analysis | |
| Window | chr21:20139325-20270397 |
| RNA-seq Change (±2kb) | Mean: 5.9786761994473636e-05 | Peak: 0.070068359375 |
| ATAC Change (±2kb) | Mean: 7.656522211618721e-05 | Peak: 0.8242183923721313 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change 0.4% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D