Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10042772

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10042772
Fusion NameHBV-LINC02101 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID80
Sample Name#080N
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandq11.2
Human Strand
Human Integration Location Typeintronic
Hg19 Start57466128
Hg19 End57466128
Hg38 Start58170301
Hg38 End58170301
Junction SequenceGAAAGGACCTGTTTACAGAG
Target Gene
Target GeneLINC02101, ENSG00000286853
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_D
Virus Genome AccessionX85254
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase)
Virus Genome Length3182 bp
Virus Breakpoint11943
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-