| Basic Information ▶ | |
| VISDB ID | TVIS10043443 |
|---|---|
| Fusion Name | HBV-SLC39A11 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 80 |
| Sample Name | #080N |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr17 |
| Cytogenetic Band | q24.3 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 70822561 |
| Hg19 End | 70822561 |
| Hg38 Start | 72826422 |
| Hg38 End | 72826422 |
| Junction Sequence | ACGACATTTCTTGATGGACT |
| Target Gene ▶ | |
| Target Gene | SLC39A11 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_D |
| Virus Genome Accession | X85254 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase) |
| Virus Genome Length | 3182 bp |
| Virus Breakpoint1 | 772 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000133195.13 |
| Gene Name | SLC39A11 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000909853.1, Transcript 2: ENST00000909856.1, Transcript 3: ENST00000909852.1, Transcript 4: ENST00000255559.8, Transcript 5: ENST00000909850.1, Transcript 6: ENST00000952470.1, Transcript 7: ENST00000542342.6, Transcript 8: ENST00000909849.1, Transcript 9: ENST00000909854.1, Transcript 10: ENST00000952469.1, Transcript 11: ENST00000952468.1, Transcript 12: ENST00000909855.1, Transcript 13: ENST00000582769.5, Transcript 14: ENST00000581581.1, Transcript 15: ENST00000579319.1, Transcript 16: ENST00000583715.5, Transcript 17: ENST00000579491.1, Transcript 18: ENST00000584129.1 |
| SpliceAI Score | |
| Delta Scores | Acceptor Gain: 0.000 | Acceptor Loss: 0.000 | Donor Gain: 0.000 | Donor Loss: 0.000 |
| Delta Score Max | 0.000 |
| Delta Position at Max | -63 |
| Delta Score Flag | LOW |
| Gene | SLC39A11 |
| AlphaGenome Analysis | |
| Window | chr17:72760886-72891958 |
| RNA-seq Change (±2kb) | Mean: -0.0003440943546593189 | Peak: 0.029052734375 |
| ATAC Change (±2kb) | Mean: -3.5637571272673085e-05 | Peak: 1.2187011241912842 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -0.2% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D