| Basic Information ▶ | |
| VISDB ID | TVIS10043727 |
|---|---|
| Fusion Name | HBV-CHODL integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 81 |
| Sample Name | #081N |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr21 |
| Cytogenetic Band | q21.1 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 19451302 |
| Hg19 End | 19451302 |
| Hg38 Start | 18078984 |
| Hg38 End | 18078984 |
| Junction Sequence | TTGTTTATTTTTCTTCGGTA |
| Target Gene ▶ | |
| Target Gene | CHODL, ENSG00000227330 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_B |
| Virus Genome Accession | AF100309 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus strain 56, complete genome |
| Virus Genome Length | 3215 bp |
| Virus Breakpoint1 | 2254 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000400128.5, Transcript 2: ENST00000400131.5, Transcript 3: ENST00000400135.5, Transcript 4: ENST00000400127.5, Transcript 5: ENST00000432412.1 |
| Transcript 1 Gene Id | ENSG00000154645.14 |
| Transcript 1 Gene Name | CHODL |
| Transcript 2 Gene Id | ENSG00000154645.14 |
| Transcript 2 Gene Name | CHODL |
| Transcript 3 Gene Id | ENSG00000154645.14 |
| Transcript 3 Gene Name | CHODL |
| Transcript 4 Gene Id | ENSG00000154645.14 |
| Transcript 4 Gene Name | CHODL |
| Transcript 5 Gene Id | ENSG00000227330.1 |
| Transcript 5 Gene Name | ENSG00000227330 |
| AlphaGenome Analysis | |
| Chromosome | chr21 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D