| Basic Information ▶ | |
| VISDB ID | TVIS10043992 |
|---|---|
| Fusion Name | HBV-LINC03051 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 1154 |
| Sample Name | #1154N |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr3 |
| Cytogenetic Band | q13.32 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 117545833 |
| Hg19 End | 117545833 |
| Hg38 Start | 117826986 |
| Hg38 End | 117826986 |
| Junction Sequence | CCTTCATTCCCTGACCCTCA |
| Target Gene ▶ | |
| Target Gene | LINC03051, LSAMP |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_E |
| Virus Genome Accession | AB032431 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus genomic DNA, complete sequence, isolate:HBV/E-Ch195 |
| Virus Genome Length | 3212 bp |
| Virus Breakpoint1 | 2022 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000717962.1, Transcript 2: ENST00000484092.1, Transcript 3: ENST00000717944.1 |
| Transcript 1 Gene Id | ENSG00000185565.14 |
| Transcript 1 Gene Name | LSAMP |
| Transcript 2 Gene Id | ENSG00000239268.6 |
| Transcript 2 Gene Name | LINC03051 |
| Transcript 3 Gene Id | ENSG00000239268.6 |
| Transcript 3 Gene Name | LINC03051 |
| AlphaGenome Analysis | |
| Chromosome | chr3 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D