| Basic Information ▶ | |
| VISDB ID | TVIS10044020 |
|---|---|
| Fusion Name | HBV-ZNRF1 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 1154 |
| Sample Name | #1154N |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr16 |
| Cytogenetic Band | q23.1 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 75116143 |
| Hg19 End | 75116143 |
| Hg38 Start | 75082245 |
| Hg38 End | 75082245 |
| Junction Sequence | TCATAAGGTCGGTGTACTTC |
| Target Gene ▶ | |
| Target Gene | ZNRF1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_E |
| Virus Genome Accession | AB032431 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus genomic DNA, complete sequence, isolate:HBV/E-Ch195 |
| Virus Genome Length | 3212 bp |
| Virus Breakpoint1 | 1819 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000186187.13 |
| Gene Name | ZNRF1 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000959615.1, Transcript 2: ENST00000926890.1, Transcript 3: ENST00000335325.9, Transcript 4: ENST00000881835.1, Transcript 5: ENST00000926891.1, Transcript 6: ENST00000881833.1, Transcript 7: ENST00000926893.1, Transcript 8: ENST00000320619.10, Transcript 9: ENST00000926892.1, Transcript 10: ENST00000881834.1, Transcript 11: ENST00000959617.1, Transcript 12: ENST00000959616.1, Transcript 13: ENST00000881836.1, Transcript 14: ENST00000566250.5, Transcript 15: ENST00000567962.5, Transcript 16: ENST00000881837.1, Transcript 17: ENST00000881838.1, Transcript 18: ENST00000564320.1, Transcript 19: ENST00000568511.1 |
| SpliceAI Score | |
| Delta Scores | Acceptor Gain: 0.000 | Acceptor Loss: 0.010 | Donor Gain: 0.020 | Donor Loss: 0.010 |
| Delta Score Max | 0.020 |
| Delta Position at Max | 0 |
| Delta Score Flag | LOW |
| Gene | ZNRF1 |
| AlphaGenome Analysis | |
| Chromosome | chr16 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D