Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10044208

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10044208
Fusion NameHBV-KMT2B integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID1208
Sample Name#1208T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr19
Cytogenetic Bandq13.12
Human Strand
Human Integration Location Typeexonic
Hg19 Start36213510
Hg19 End36213510
Hg38 Start35722608
Hg38 End35722608
Junction SequenceTCTGCCGTCATGCTGCTGTG
Target Gene
Target GeneKMT2B
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_C
Virus Genome AccessionAB014381
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint11263
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-