Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10044361

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10044361
Fusion NameHBV-ENSG00000301177 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID1211
Sample Name#1211T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandq23.3
Human Strand
Human Integration Location Typeintronic
Hg19 Start115465570
Hg19 End115465570
Hg38 Start114453341
Hg38 End114453341
Junction SequenceTGACCAGACTTTAAACCTCA
Target Gene
Target GeneENSG00000301177
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_E
Virus Genome AccessionAB032431
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genomic DNA, complete sequence, isolate:HBV/E-Ch195
Virus Genome Length3212 bp
Virus Breakpoint11542
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-