Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10044531

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10044531
Fusion NameHBV-MAP2K2 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID1548
Sample Name#1548T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr19
Cytogenetic Bandp13.3
Human Strand
Human Integration Location Typeintronic
Hg19 Start4094404
Hg19 End4094404
Hg38 Start4094406
Hg38 End4094406
Junction SequenceTGGCAGCCTGCACCCTCCCG
Target Gene
Target GeneMAP2K2
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_A
Virus Genome AccessionX02763
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis b virus genome (serotype adw2)
Virus Genome Length3221 bp
Virus Breakpoint1445
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-