| Basic Information ▶ | |
| VISDB ID | TVIS10044611 |
|---|---|
| Fusion Name | HBV-LINC01798 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 1597 |
| Sample Name | #1597T |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr2 |
| Cytogenetic Band | p14 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 66995995 |
| Hg19 End | 66995995 |
| Hg38 Start | 66768863 |
| Hg38 End | 66768863 |
| Junction Sequence | AAGTCGATGTCATGTGTGTG |
| Target Gene ▶ | |
| Target Gene | LINC01798 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_G |
| Virus Genome Accession | HE981176 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus complete genome, genotype G, clone ARG56.5.9 |
| Virus Genome Length | 3248 bp |
| Virus Breakpoint1 | 284 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000232046.9 |
| Gene Name | LINC01798 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000758436.1, Transcript 2: ENST00000758437.1, Transcript 3: ENST00000758450.1, Transcript 4: ENST00000715601.1, Transcript 5: ENST00000758432.1, Transcript 6: ENST00000758440.1 |
| AlphaGenome Analysis | |
| Window | chr2:66703327-66834399 |
| RNA-seq Change (±2kb) | Mean: 1.4123294931778219e-05 | Peak: 0.010498046875 |
| ATAC Change (±2kb) | Mean: 0.0004762039752677083 | Peak: 2.749999523162842 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change 1.3% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D