Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10044771

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10044771
Fusion NameHBV-ENSG00000286458 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID1704
Sample Name#1704T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandq33
Human Strand
Human Integration Location Typeintronic
Hg19 Start134565297
Hg19 End134565297
Hg38 Start134880546
Hg38 End134880546
Junction SequenceAAAAACGAAGATTAAACTTA
Target Gene
Target GeneENSG00000286458, CALD1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_E
Virus Genome AccessionAB032431
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genomic DNA, complete sequence, isolate:HBV/E-Ch195
Virus Genome Length3212 bp
Virus Breakpoint12504
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-