Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10045304

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10045304
Fusion NameHBV-ENSG00000253452 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID1958
Sample Name#1958T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandp12
Human Strand
Human Integration Location Typeintronic
Hg19 Start35768398
Hg19 End35768398
Hg38 Start35910880
Hg38 End35910880
Junction SequenceGTATGTTGTTATATCAGTCT
Target Gene
Target GeneENSG00000253452
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_D
Virus Genome AccessionX85254
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase)
Virus Genome Length3182 bp
Virus Breakpoint11902
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-