| Basic Information ▶ | |
| VISDB ID | TVIS10045488 |
|---|---|
| Fusion Name | HBV-ENSG00000298055 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 1985 |
| Sample Name | #1985N |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr11 |
| Cytogenetic Band | q14.1 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 82823677 |
| Hg19 End | 82823677 |
| Hg38 Start | 83112635 |
| Hg38 End | 83112635 |
| Junction Sequence | ATAAAATAAAATAAAATCTC |
| Target Gene ▶ | |
| Target Gene | ENSG00000298055, RAB30-DT |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_C |
| Virus Genome Accession | AB014381 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus 22Y04HCC genomic DNA, complete sequence |
| Virus Genome Length | 3215 bp |
| Virus Breakpoint1 | 2449 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Transcript | Transcript 1: ENST00000752551.1, Transcript 2: ENST00000752552.1, Transcript 3: ENST00000752748.1, Transcript 4: ENST00000752750.1, Transcript 5: ENST00000752749.1, Transcript 6: ENST00000525775.1 |
| Transcript 1 Gene Id | ENSG00000246067.11 |
| Transcript 1 Gene Name | RAB30-DT |
| Transcript 1 Region | intron |
| Transcript 1 Impact | intronic_insertion |
| Transcript 2 Gene Id | ENSG00000246067.11 |
| Transcript 2 Gene Name | RAB30-DT |
| Transcript 2 Region | intron |
| Transcript 2 Impact | intronic_insertion |
| Transcript 3 Gene Id | ENSG00000298055.1 |
| Transcript 3 Gene Name | ENSG00000298055 |
| Transcript 3 Region | intron |
| Transcript 3 Impact | intronic_insertion |
| Transcript 4 Gene Id | ENSG00000298055.1 |
| Transcript 4 Gene Name | ENSG00000298055 |
| Transcript 4 Region | intron |
| Transcript 4 Impact | intronic_insertion |
| Transcript 5 Gene Id | ENSG00000298055.1 |
| Transcript 5 Gene Name | ENSG00000298055 |
| Transcript 5 Region | intron |
| Transcript 5 Impact | intronic_insertion |
| Transcript 6 Gene Id | ENSG00000254965.1 |
| Transcript 6 Gene Name | C1DP5 |
| Transcript 6 Region | promoter |
| Transcript 6 Impact | promoter_insertion |
| AlphaGenome Analysis | |
| Window | chr11:83047099-83178171 |
| RNA-seq Change (±2kb) | Mean: 4.667010216508061e-05 | Peak: 0.111328125 |
| ATAC Change (±2kb) | Mean: -7.877450116211548e-05 | Peak: 3.9818115234375 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -0.4% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D