| Basic Information ▶ | |
| VISDB ID | TVIS10046176 |
|---|---|
| Fusion Name | HBV-LINC01724 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 226 |
| Sample Name | #226T |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr1 |
| Cytogenetic Band | q31.3 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 196037532 |
| Hg19 End | 196037532 |
| Hg38 Start | 196068402 |
| Hg38 End | 196068402 |
| Junction Sequence | GGTTTCGAGGACTATCATTC |
| Target Gene ▶ | |
| Target Gene | LINC01724 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_A |
| Virus Genome Accession | X02763 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis b virus genome (serotype adw2) |
| Virus Genome Length | 3221 bp |
| Virus Breakpoint1 | 302 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000227421.3 |
| Gene Name | LINC01724 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000838214.1, Transcript 2: ENST00000838215.1, Transcript 3: ENST00000838213.1, Transcript 4: ENST00000838211.1, Transcript 5: ENST00000838209.1, Transcript 6: ENST00000838217.1, Transcript 7: ENST00000838216.1, Transcript 8: ENST00000838220.1, Transcript 9: ENST00000838218.1, Transcript 10: ENST00000838219.1 |
| AlphaGenome Analysis | |
| Chromosome | chr1 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D