| Basic Information ▶ | |
| VISDB ID | TVIS10046268 |
|---|---|
| Fusion Name | HBV-GDNF-AS1 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 237 |
| Sample Name | #237N |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr5 |
| Cytogenetic Band | p13.2 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 38095969 |
| Hg19 End | 38095969 |
| Hg38 Start | 38095867 |
| Hg38 End | 38095867 |
| Junction Sequence | TTTTGTGAGTTATGTCATAA |
| Target Gene ▶ | |
| Target Gene | GDNF-AS1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_A |
| Virus Genome Accession | X02763 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis b virus genome (serotype adw2) |
| Virus Genome Length | 3221 bp |
| Virus Breakpoint1 | 2929 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000248587.9 |
| Gene Name | GDNF-AS1 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000715998.1, Transcript 2: ENST00000716016.1, Transcript 3: ENST00000669619.1, Transcript 4: ENST00000666505.1, Transcript 5: ENST00000513039.3, Transcript 6: ENST00000652286.1, Transcript 7: ENST00000669275.1, Transcript 8: ENST00000662564.1, Transcript 9: ENST00000671526.1, Transcript 10: ENST00000750372.1 |
| AlphaGenome Analysis | |
| Window | chr5:38030331-38161403 |
| RNA-seq Change (±2kb) | Mean: 1.9587221686379053e-05 | Peak: 0.004791259765625 |
| ATAC Change (±2kb) | Mean: -0.00011762279609683901 | Peak: 1.961334228515625 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -0.5% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D