Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10046579

Genomic Region Visualization (IGV)

Basic Information ▶
VISDB IDTVIS10046579
Fusion NameHBV-FLII integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID245
Sample Name#245N
Sample TypeTumor
Age-
Gender-
Disease Information ▶
Disease Name-
Disease Abbreviation-
Cancer-
Literature ▶
PubMed ID33563643
JournalGut
Published Year2021
Human Genome ▶
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandp11.2
Human Strand
Human Integration Location Typeintronic
Hg19 Start18155899
Hg19 End18155899
Hg38 Start18252585
Hg38 End18252585
Junction SequenceACATGGACATTGACCCTTAT
Target Gene ▶
Target GeneFLII
Nearby Gene-
Distance-
Virus Information ▶
Virus NameHepatitis B virus
Virus Subtype NameHBV_D
Virus Genome AccessionX85254
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase)
Virus Genome Length3182 bp
Virus Breakpoint11833
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect ▶
Gene IdENSG00000177731.17
Gene NameFLII
TranscriptTranscript 1: ENST00000855804.1, Transcript 2: ENST00000938408.1, Transcript 3: ENST00000938407.1, Transcript 4: ENST00000855809.1, Transcript 5: ENST00000960099.1, Transcript 6: ENST00000938406.1, Transcript 7: ENST00000855807.1, Transcript 8: ENST00000327031.9, Transcript 9: ENST00000855805.1, Transcript 10: ENST00000855806.1, Transcript 11: ENST00000960103.1, Transcript 12: ENST00000960101.1, Transcript 13: ENST00000938403.1, Transcript 14: ENST00000855812.1, Transcript 15: ENST00000855811.1, Transcript 16: ENST00000855816.1, Transcript 17: ENST00000855813.1, Transcript 18: ENST00000855814.1, Transcript 19: ENST00000938410.1, Transcript 20: ENST00000578558.5, Transcript 21: ENST00000855810.1, Transcript 22: ENST00000938405.1, Transcript 23: ENST00000855808.1, Transcript 24: ENST00000938404.1, Transcript 25: ENST00000855815.1, Transcript 26: ENST00000960118.1, Transcript 27: ENST00000960116.1, Transcript 28: ENST00000960104.1, Transcript 29: ENST00000545457.6, Transcript 30: ENST00000960100.1, Transcript 31: ENST00000960098.1, Transcript 32: ENST00000960105.1, Transcript 33: ENST00000960115.1, Transcript 34: ENST00000960107.1, Transcript 35: ENST00000938409.1, Transcript 36: ENST00000960112.1, Transcript 37: ENST00000960102.1, Transcript 38: ENST00000578101.5, Transcript 39: ENST00000579294.5, Transcript 40: ENST00000577485.1, Transcript 41: ENST00000496727.1, Transcript 42: ENST00000488221.5, Transcript 43: ENST00000488932.5, Transcript 44: ENST00000461110.2, Transcript 45: ENST00000577626.1
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Transcript 41 Regionpromoter
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SpliceAI Score
Delta ScoresAcceptor Gain: 0.060 | Acceptor Loss: 0.020 | Donor Gain: 0.000 | Donor Loss: 0.010
Delta Score Max0.060
Delta Position at Max-4
Delta Score FlagLOW
GeneFLII
AlphaGenome Analysis
Chromosomechr17
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