Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10047122

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10047122
Fusion NameHBV-UBE2Q2P1 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID2688
Sample Name#2688N
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr15
Cytogenetic Bandq25.2
Human Strand
Human Integration Location Typeintronic
Hg19 Start85078598
Hg19 End85078598
Hg38 Start84535367
Hg38 End84535367
Junction SequenceAGAACAAAAAGAAGGTCACG
Target Gene
Target GeneUBE2Q2P1, UBE2Q2P1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_C
Virus Genome AccessionAB014381
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint12230
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-