Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10047552

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10047552
Fusion NameHBV-PPFIA2 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID3338
Sample Name#3338N
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandq21.31
Human Strand
Human Integration Location Typeexonic
Hg19 Start81824688
Hg19 End81824688
Hg38 Start81430909
Hg38 End81430909
Junction SequenceATAATTCATTATAAGTGTAA
Target Gene
Target GenePPFIA2, ENSG00000258162
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_D
Virus Genome AccessionX85254
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase)
Virus Genome Length3182 bp
Virus Breakpoint1399
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-