| Basic Information ▶ | |
| VISDB ID | TVIS10047680 |
|---|---|
| Fusion Name | HBV-MAPK10 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 335 |
| Sample Name | #335N |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr4 |
| Cytogenetic Band | q21.3 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 87343223 |
| Hg19 End | 87343223 |
| Hg38 Start | 86422070 |
| Hg38 End | 86422070 |
| Junction Sequence | ACGGAGTTCCAGCCAGCAAC |
| Target Gene ▶ | |
| Target Gene | MAPK10 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_D |
| Virus Genome Accession | X85254 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase) |
| Virus Genome Length | 3182 bp |
| Virus Breakpoint1 | 1826 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000109339.25 |
| Gene Name | MAPK10 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000642035.1, Transcript 2: ENST00000641051.1, Transcript 3: ENST00000641952.1, Transcript 4: ENST00000641718.1, Transcript 5: ENST00000641902.1, Transcript 6: ENST00000641657.1, Transcript 7: ENST00000641050.1, Transcript 8: ENST00000950511.1, Transcript 9: ENST00000641634.1, Transcript 10: ENST00000641854.1, Transcript 11: ENST00000641170.1, Transcript 12: ENST00000641297.1, Transcript 13: ENST00000639972.2, Transcript 14: ENST00000641385.1, Transcript 15: ENST00000641435.1, Transcript 16: ENST00000310816.8, Transcript 17: ENST00000638499.1, Transcript 18: ENST00000641041.1, Transcript 19: ENST00000641120.1, Transcript 20: ENST00000361569.8, Transcript 21: ENST00000395160.9, Transcript 22: ENST00000641313.1, Transcript 23: ENST00000641737.1, Transcript 24: ENST00000641391.1, Transcript 25: ENST00000641862.1, Transcript 26: ENST00000642023.1, Transcript 27: ENST00000641831.1, Transcript 28: ENST00000641384.1, Transcript 29: ENST00000641157.1, Transcript 30: ENST00000642009.1, Transcript 31: ENST00000641274.1, Transcript 32: ENST00000513186.7, Transcript 33: ENST00000885434.1, Transcript 34: ENST00000515400.3, Transcript 35: ENST00000642019.1, Transcript 36: ENST00000641203.1, Transcript 37: ENST00000513839.5, Transcript 38: ENST00000641629.1, Transcript 39: ENST00000512017.7, Transcript 40: ENST00000511328.5, Transcript 41: ENST00000502302.6, Transcript 42: ENST00000639989.2, Transcript 43: ENST00000641763.1, Transcript 44: ENST00000506773.7, Transcript 45: ENST00000641907.1, Transcript 46: ENST00000642049.1, Transcript 47: ENST00000640445.1, Transcript 48: ENST00000638946.2, Transcript 49: ENST00000642048.1, Transcript 50: ENST00000503911.5, Transcript 51: ENST00000641016.1, Transcript 52: ENST00000640527.1, Transcript 53: ENST00000509464.7, Transcript 54: ENST00000512046.2, Transcript 55: ENST00000641675.1, Transcript 56: ENST00000641300.1, Transcript 57: ENST00000641080.1, Transcript 58: ENST00000641782.1, Transcript 59: ENST00000638867.2, Transcript 60: ENST00000640544.1, Transcript 61: ENST00000504397.6, Transcript 62: ENST00000641037.1 |
| AlphaGenome Analysis | |
| Window | chr4:86356534-86487606 |
| RNA-seq Change (±2kb) | Mean: -0.00014940049732103944 | Peak: 0.0859375 |
| ATAC Change (±2kb) | Mean: 0.0002695299335755408 | Peak: 0.98779296875 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change 1.1% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D