| Basic Information ▶ | |
| VISDB ID | TVIS10047901 |
|---|---|
| Fusion Name | HBV-ENSG00000308115 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 3620 |
| Sample Name | #3620T |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr2 |
| Cytogenetic Band | q31.2 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 178037767 |
| Hg19 End | 178037767 |
| Hg38 Start | 177173039 |
| Hg38 End | 177173039 |
| Junction Sequence | GGCTAAATTTACTAAACTCC |
| Target Gene ▶ | |
| Target Gene | ENSG00000308115, ENSG00000229337 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_E |
| Virus Genome Accession | AB032431 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus genomic DNA, complete sequence, isolate:HBV/E-Ch195 |
| Virus Genome Length | 3212 bp |
| Virus Breakpoint1 | 672 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000668465.2, Transcript 2: ENST00000830837.1, Transcript 3: ENST00000830838.1, Transcript 4: ENST00000830839.1, Transcript 5: ENST00000830836.1, Transcript 6: ENST00000830835.1, Transcript 7: ENST00000831021.1, Transcript 8: ENST00000831020.1, Transcript 9: ENST00000455416.1, Transcript 10: ENST00000831022.1, Transcript 11: ENST00000831800.1 |
| Transcript 1 Gene Id | ENSG00000229337.3 |
| Transcript 1 Gene Name | ENSG00000229337 |
| Transcript 2 Gene Id | ENSG00000229337.3 |
| Transcript 2 Gene Name | ENSG00000229337 |
| Transcript 3 Gene Id | ENSG00000229337.3 |
| Transcript 3 Gene Name | ENSG00000229337 |
| Transcript 4 Gene Id | ENSG00000229337.3 |
| Transcript 4 Gene Name | ENSG00000229337 |
| Transcript 5 Gene Id | ENSG00000229337.3 |
| Transcript 5 Gene Name | ENSG00000229337 |
| Transcript 6 Gene Id | ENSG00000229337.3 |
| Transcript 6 Gene Name | ENSG00000229337 |
| Transcript 7 Gene Id | ENSG00000229337.3 |
| Transcript 7 Gene Name | ENSG00000229337 |
| Transcript 8 Gene Id | ENSG00000229337.3 |
| Transcript 8 Gene Name | ENSG00000229337 |
| Transcript 9 Gene Id | ENSG00000229337.3 |
| Transcript 9 Gene Name | ENSG00000229337 |
| Transcript 10 Gene Id | ENSG00000229337.3 |
| Transcript 10 Gene Name | ENSG00000229337 |
| Transcript 11 Gene Id | ENSG00000308115.1 |
| Transcript 11 Gene Name | ENSG00000308115 |
| AlphaGenome Analysis | |
| Window | chr2:177107503-177238575 |
| RNA-seq Change (±2kb) | Mean: 6.461582984229608e-07 | Peak: 0.002532958984375 |
| ATAC Change (±2kb) | Mean: -0.00010712425864767283 | Peak: 4.6058349609375 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -0.2% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D