Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10048096

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10048096
Fusion NameHBV-chrY:9222956 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID3769
Sample Name#3769T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human ChromosomechrY
Cytogenetic Bandp11.2
Human Strand
Human Integration Location Typeintergenic
Hg19 Start9060565
Hg19 End9060565
Hg38 Start9222956
Hg38 End9222956
Junction SequenceTAAGTCTTACTATTACCTTA
Target Gene
Target Gene-
Nearby GeneELOCP4
Distance7959
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_E
Virus Genome AccessionAB032431
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genomic DNA, complete sequence, isolate:HBV/E-Ch195
Virus Genome Length3212 bp
Virus Breakpoint11823
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-