Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10048107

Basic Information ▶
VISDB ID	TVIS10048107
Fusion Name	HBV-chr7:83317587 integration
Validated	No
Curated Way	Curated
Method	HBV capture sequencing
Wet Assay	Yes
Sample ID	3788
Sample Name	#3788T
Sample Type	Tumor
Age	-
Gender	-
Disease Information ▶
Disease Name	Hepatocellular carcinoma
Disease Abbreviation	HCC
Cancer	Yes
Literature ▶
PubMed ID	33563643
Journal	Gut
Published Year	2021
Human Genome ▶
Human Genome Version Description	GRCh37/hg19
Human Genome RefSeq Accession	GCF_000001405.13
Human Chromosome	chr7
Cytogenetic Band	q21.11
Human Strand
Human Integration Location Type	intergenic
Hg19 Start	82946903
Hg19 End	82946903
Hg38 Start	83317587
Hg38 End	83317587
Junction Sequence	GGGAAGCTATCGGTGCTAAG
Target Gene ▶
Target Gene	-
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Hepatitis B virus
Virus Subtype Name	HBV_E
Virus Genome Accession	AB032431
TaxonomyID	10407
Virus Abbreviation	HBV
Virus Genome	Hepatitis B virus genomic DNA, complete sequence, isolate:HBV/E-Ch195
Virus Genome Length	3212 bp
Virus Breakpoint1	875
Virus Breakpoint2	-
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	-
ViMIC ID	-
Predicted VIS Effect ▶
Region	intergenic
Impact	NA

AlphaGenome Analysis
Window	chr7:83252051-83383123
RNA-seq Change (±2kb)	Mean: 3.3640167202975135e-06 \| Peak: 0.002838134765625
ATAC Change (±2kb)	Mean: -0.00019861852342728525 \| Peak: 1.2568359375
Interpretation	RNA-seq: no signal in region (REF≈0, ALT≈0) \| Splice sites: no signal in region (REF≈0, ALT≈0) \| ATAC: minimal change -0.9%
Visualization