| Basic Information ▶ | |
| VISDB ID | TVIS10048467 |
|---|---|
| Fusion Name | HBV-KDM4B integration |
| Validated | No |
| Curated Way | Curated |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | 402 |
| Sample Name | #402N |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 33563643 |
| Journal | Gut |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr19 |
| Cytogenetic Band | p13.3 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 5050150 |
| Hg19 End | 5050150 |
| Hg38 Start | 5050139 |
| Hg38 End | 5050139 |
| Junction Sequence | TTATGAGACTTTACCAACGT |
| Target Gene ▶ | |
| Target Gene | KDM4B |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV_A |
| Virus Genome Accession | X02763 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis b virus genome (serotype adw2) |
| Virus Genome Length | 3221 bp |
| Virus Breakpoint1 | 1808 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000127663.17 |
| Gene Name | KDM4B |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000879851.1, Transcript 2: ENST00000879850.1, Transcript 3: ENST00000938256.1, Transcript 4: ENST00000938254.1, Transcript 5: ENST00000938251.1, Transcript 6: ENST00000879848.1, Transcript 7: ENST00000611640.4, Transcript 8: ENST00000159111.9, Transcript 9: ENST00000879852.1, Transcript 10: ENST00000959317.1, Transcript 11: ENST00000959316.1, Transcript 12: ENST00000879849.1, Transcript 13: ENST00000938255.1, Transcript 14: ENST00000959318.1, Transcript 15: ENST00000938253.1, Transcript 16: ENST00000938252.1, Transcript 17: ENST00000959319.1, Transcript 18: ENST00000381759.8, Transcript 19: ENST00000959320.1, Transcript 20: ENST00000536461.6, Transcript 21: ENST00000592175.5 |
| SpliceAI Score | |
| Delta Scores | Acceptor Gain: 0.010 | Acceptor Loss: 0.010 | Donor Gain: 0.010 | Donor Loss: 0.000 |
| Delta Score Max | 0.010 |
| Delta Position at Max | 177 |
| Delta Score Flag | LOW |
| Gene | KDM4B |
| AlphaGenome Analysis | |
| Chromosome | chr19 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D