Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10048562

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10048562
Fusion NameHBV-ADGRB3 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID4124
Sample Name#4124N
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq12
Human Strand
Human Integration Location Typeintronic
Hg19 Start69488155
Hg19 End69488155
Hg38 Start68778263
Hg38 End68778263
Junction SequenceTCGTCGGAAGTGGTACATGA
Target Gene
Target GeneADGRB3
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_C
Virus Genome AccessionAB014381
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint1675
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-