Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10048929

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10048929
Fusion NameHBV-chr10:37946764 integration
ValidatedNo
Curated WayCurated
MethodHBV capture sequencing
Wet AssayYes
Sample ID4177
Sample Name#4177N
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID33563643
JournalGut
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandp11.21
Human Strand
Human Integration Location Typeintergenic
Hg19 Start38235692
Hg19 End38235692
Hg38 Start37946764
Hg38 End37946764
Junction SequenceAATTGTTCGCTGGTTTAGAA
Target Gene
Target Gene-
Nearby GeneZNF25
Distance2809
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV_D
Virus Genome AccessionX85254
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus genome (PreS1, PreS2, S, PreC, C, X genes and polymerase)
Virus Genome Length3182 bp
Virus Breakpoint11807
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-