| Basic Information ▶ | |
| VISDB ID | TVIS10049158 |
|---|---|
| Fusion Name | HBV-LINC01162 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | EBV capture sequencing, followed by Viral Integration Pathway Analysis (VIPA) pipeline |
| Wet Assay | Yes |
| Sample ID | HepG2215.21 |
| Sample Name | New sample |
| Sample Type | HepG2.2.15 Cell line |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35968887 |
| Journal | Clinical and Translational Medicine |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr7 |
| Cytogenetic Band | p15.3 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 20985387 |
| Hg38 End | 20985387 |
| Junction Sequence | gagttgcctgaactttaggcccatattagtgttgacatAACTGACTACTAGGTCTCTAGATGCTGGATCTTCCAAATTAACACCCACCCAGGTAGCTAGAGTCAGACTCGAGGTGCCAGTGGAGCCAATGTCTGCTGAGGTATCTCTCCCTGGGTTGCAGGTGTTTACCTTCCTCACTATGTCCTCATaca |
| Target Gene ▶ | |
| Target Gene | LINC01162, ENSG00000285592 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | - |
| Virus Genome Accession | NC_003977.2 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus (strain ayw) genome |
| Virus Genome Length | 3182 bp |
| Virus Breakpoint1 | 2099 |
| Virus Breakpoint2 | - |
| Virus Gene Name | C |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D