Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10050423

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10050423
Fusion NameHBV-OR14I1 integration
ValidatedNo
Curated WayCurated
MethodEBV capture sequencing, followed by Viral Integration Pathway Analysis (VIPA) pipeline
Wet AssayNo
Sample IDSRR3104757.33
Sample NameSRA335342
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID35968887
JournalClinical and Translational Medicine
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr1
Cytogenetic Bandq44
Human Strand+
Human Integration Location Typeintronic
Hg19 Start-
Hg19 End-
Hg38 Start248688605
Hg38 End248688605
Junction SequencegataagataggggcatttggtggtctgTAAGCGGGAGGAGTGCGAATCCACACTCCAAAAGACTGGTACCACTTTTCTCTCCTGTTTTGTTTTCAAGATTGCAAGACTGAATACTATTTCCCCCCACccaccagaaagagtttg
Target Gene
Target GeneOR14I1, ENSG00000286015
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB014381
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint12260
Virus Breakpoint2-
Virus Gene NameC
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-