Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10051437

Genomic Region Visualization (IGV)

Basic Information ▶
VISDB IDTVIS10051437
Fusion NameHBV-SET integration
ValidatedNo
Curated WayCurated
MethodEBV capture sequencing, followed by Viral Integration Pathway Analysis (VIPA) pipeline
Wet AssayNo
Sample IDSRR3104939.3
Sample NameSRA335342
Sample TypeTumor
Age-
Gender-
Disease Information ▶
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature ▶
PubMed ID35968887
JournalClinical and Translational Medicine
Published Year2022
Human Genome ▶
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr9
Cytogenetic Bandq34.11
Human Strand+
Human Integration Location Typeintronic
Hg19 Start-
Hg19 End-
Hg38 Start128688417
Hg38 End128688417
Junction SequenceTAGTGGTTCAGAACTTTGCCTCTCAAGTAGAACTTGTTGGCCCCTTTCATCTCTATGAACAGAACACCTCCTTTCCATGGCTGCTAGGGTGtGCTGCCAA
Target Gene ▶
Target GeneSET
Nearby Gene-
Distance-
Virus Information ▶
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB014381
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint11361
Virus Breakpoint2-
Virus Gene NameX,P
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect ▶
Gene IdENSG00000119335.19
Gene NameSET
TranscriptTranscript 1: ENST00000686840.1, Transcript 2: ENST00000372692.8, Transcript 3: ENST00000921998.1, Transcript 4: ENST00000691158.1, Transcript 5: ENST00000686568.1, Transcript 6: ENST00000409104.7, Transcript 7: ENST00000322030.13, Transcript 8: ENST00000878517.1, Transcript 9: ENST00000878518.1, Transcript 10: ENST00000921999.1, Transcript 11: ENST00000372688.9, Transcript 12: ENST00000968516.1, Transcript 13: ENST00000372686.6, Transcript 14: ENST00000466009.5, Transcript 15: ENST00000477806.5, Transcript 16: ENST00000480217.5, Transcript 17: ENST00000480536.2
Transcript 1 Regionintron
Transcript 1 Impactintronic_insertion
Transcript 2 Regionintron
Transcript 2 Impactintronic_insertion
Transcript 3 Regionintron
Transcript 3 Impactintronic_insertion
Transcript 4 Regionintron
Transcript 4 Impactintronic_insertion
Transcript 5 Regionintron
Transcript 5 Impactintronic_insertion
Transcript 6 Regionintron
Transcript 6 Impactintronic_insertion
Transcript 7 Regionpromoter
Transcript 7 Impactpromoter_insertion
Transcript 8 Regionpromoter
Transcript 8 Impactpromoter_insertion
Transcript 9 Regionpromoter
Transcript 9 Impactpromoter_insertion
Transcript 10 Regionpromoter
Transcript 10 Impactpromoter_insertion
Transcript 11 Regionpromoter
Transcript 11 Impactpromoter_insertion
Transcript 12 Regionpromoter
Transcript 12 Impactpromoter_insertion
Transcript 13 Regionpromoter
Transcript 13 Impactpromoter_insertion
Transcript 14 Regionpromoter
Transcript 14 Impactpromoter_insertion
Transcript 15 Regionpromoter
Transcript 15 Impactpromoter_insertion
Transcript 16 Regionpromoter
Transcript 16 Impactpromoter_insertion
Transcript 17 Regionpromoter
Transcript 17 Impactpromoter_insertion
AlphaGenome Analysis
Windowchr9:128622881-128753953
RNA-seq Change (±2kb)Mean: -0.006576988846063614 | Peak: 37.7291259765625
ATAC Change (±2kb)Mean: 0.004629346542060375 | Peak: 160.4765625
InterpretationRNA-seq: minimal change -2.2% | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change 0.9%
Visualization
Related Links: VISDB1.0  |  UCSC  |  NCBI  |  Ensembl  |  OncoKB  |  ONGene  |  HumCFS  |  COSMIC  |  miRTarBase  |  NPInter  |  ATACdb  |  ENCODE  |  Cytoscape
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